RetrogeneDB ID: | retro_mluc_2062 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430009:1215257..1216262(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB | ||
Ensembl ID: | ENSMLUG00000016086 | ||
Aliases: | None | ||
Description: | Chaperone protein DnaJ B [Source:UniProtKB/TrEMBL;Acc:G1PTT5] |
Percent Identity: | 68.21 % |
Parental protein coverage: | 85.89 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRK-LALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRDLYDKGGE |
MVKE..Y.D.LGVKPNATQEELKKA.RK.L.L...P.KNPNEGEK..........L...K...LYDKGGE | |
Retrocopy | MVKEIAY-DILGVKPNATQEELKKASRKLLGLEVPPEKNPNEGEKYEHFPSLQNAL-*CKEKELYDKGGE |
Parental | QAIKEGGAGGGFGSPMDIFDMFF-GGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQK-NVICDKC |
QAIK.GGA.GGF...M.I.DMF..G.GGR.QRERRG..V.HQ.SV.L.DL.NG.TRKLALQ....ICDK. | |
Retrocopy | QAIK-GGARGGFHFHMNISDMFY>GEGGRIQRERRGTSVMHQFSVNLDDLLNGTTRKLALQQ<IMICDKY |
Parental | EGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERI-SPKDRCKSCNGRKIVREKK |
EG.GGKKGAV.CC.NC..TGMQIRI.QI..GM.QQIQSV.ME.QGH.E.....KDRCKSCNG.KIV.E.K | |
Retrocopy | EGLGGKKGAV*CCLNCWSTGMQIRIRQIRSGMGQQIQSVSMEFQGHREWM<GTKDRCKSCNGQKIV*E-K |
Parental | ILEVHIDKGM-KDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQK |
ILEVHIDKGM.K.G.KITFHGEGDQEPGLEPGD.IIVLD.KDHAVFT..GEDLFMCMD.QLVEAL..... | |
Retrocopy | ILEVHIDKGM>KNGWKITFHGEGDQEPGLEPGDSIIVLDRKDHAVFT-QGEDLFMCMDTQLVEALPKVTQ |
Parental | PIATLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSL |
......N..I..TS..G.IVK.GD..CV..EG.PIY..P.EKG.LII.FK.NFPENGFLSPDK.SL | |
Retrocopy | CYSSQPNDSI--TSLLGLIVKNGDV*CVRSEGSPIYHKPHEKGHLIIKFKINFPENGFLSPDKNSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |