Parental gene:

Rps20, ENSMUSG00000028234

Aliases:None
Description:ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
Organism:Mouse (Mus musculus)
Coordinates:4:3831333..3835665(-)


>ENSMUSG00000028234
ATGGCATTTAAAGATACCGGAAAGACGCCCGTGGAGCCCGAAGTGGCGATTCACCGAATTCGAATCACGCTCACCAGCCG
CAACGTGAAGTCGCTGGAGAAGGTTTGTGCGGACTTGATCAGAGGCGCCAAGGAAAAGAATCTGAAAGTGAAAGGACCGG
TGCGCATGCCTACCAAGACTTTGAGAATCACTACCAGAAAAACACCTTGTGGTGAAGGTTCCAAGACCTGGGATCGATTC
CAGATGAGGATCCACAAGCGACTCATTGATTTACATAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGA
GCCGGGAGTTGAGGTTGAAGTCACCATTGCAGATGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 46 .61 RPM
SRP007412_cerebellum 22 .67 RPM
SRP007412_heart 59 .96 RPM
SRP007412_kidney 59 .75 RPM
SRP007412_liver 64 .78 RPM
SRP007412_testis 106 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 possible_ortholog 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1442 94.07 99.16
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2. retro_mmus_2796 50.82 99.16
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3. retro_mmus_3138 71.43 64.71
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4. retro_mmus_3159 67.26 94.12
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5. retro_mmus_3321 83.12 64.71
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6. retro_mmus_3627 63.74 73.11
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7. retro_mmus_3718 87.18 98.32
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Download FASTA sequences of all ENSMUSG00000028234 retrocopies