RetrogeneDB ID: | retro_ocun_1438 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:25646249..25646495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSOCUG00000003068 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 (RPS20), mRNA [Source:RefSeq mRNA;Acc:NM_001253734] |
Percent Identity: | 57.32 % |
Parental protein coverage: | 68.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRI |
V..H.I...LT....KSLEKVCA.L.RGAK..NLK.KGPV..P..TL.I..RK.P.G.GS.TW..FQMR. | |
Retrocopy | VLVH*ISNALTRHHPKSLEKVCANLTRGAKKNNLKAKGPVQRPNMTLSISVRKMPDGKGSRTWGHFQMRT |
Parental | HKRLIDLHSPSE |
H..L.DL..PS. | |
Retrocopy | HNPLPDLLYPSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 90 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 175 .55 RPM |
SRP017611_liver | 0 .00 RPM | 83 .40 RPM |