RetrogeneDB ID: | retro_ocun_1218 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:152304589..152304942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSOCUG00000003068 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 (RPS20), mRNA [Source:RefSeq mRNA;Acc:NM_001253734] |
Percent Identity: | 63.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRM-PTKTLRITTRKTP |
MAFK...K..VEPEVA....R..L...N..SLEK.CADLIR..K....KVKGPV.M.P.K.L.ITTRKT. | |
Retrocopy | MAFKEVRKSAVEPEVATR*NRVSLSNGNINSLEKGCADLIR-QKKNSVKVKGPVQM>PAKMLLITTRKTA |
Parental | CGEGS-KTWDRFQMRIHKR-LIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
C.EGS..T.D.FQMRIH...LIDLHS.SEIVKQITS.S.EP.V...V.IADA | |
Retrocopy | CSEGS<RT*DPFQMRIHNH<LIDLHSASEIVKQITSNSMEPEVQADVSIADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 90 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 175 .55 RPM |
SRP017611_liver | 0 .00 RPM | 83 .40 RPM |