RetrogeneDB ID: | retro_mmus_3138 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:60757139..60757361(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps20 | ||
Ensembl ID: | ENSMUSG00000028234 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 64.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDR |
P.EPEV.IH.IRITL.S.N.K.LEKVC.DL.RG.K....KVKGPV.MPTKTL.ITTRKT.CGEGS..W.. | |
Retrocopy | PAEPEVGIH*IRITLASGNMKLLEKVCMDLFRGTKG---KVKGPVCMPTKTLSITTRKTSCGEGSRIWEH |
Parental | FQMRIHK |
FQMRI.K | |
Retrocopy | FQMRILK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .67 RPM |
SRP007412_heart | 0 .00 RPM | 59 .96 RPM |
SRP007412_kidney | 0 .02 RPM | 59 .75 RPM |
SRP007412_liver | 0 .00 RPM | 64 .78 RPM |
SRP007412_testis | 0 .00 RPM | 106 .98 RPM |