RetrogeneDB ID: | retro_mmus_1442 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:17137327..17137681(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps20 | ||
Ensembl ID: | ENSMUSG00000028234 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677] |
Percent Identity: | 94.07 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC |
MAFKDTGKTPVEPEVAIHRIRI.LTSRNVKSLE.VC.DLIRGAKEKNLKVKGPV.MPTKTLRITTRKTPC | |
Retrocopy | MAFKDTGKTPVEPEVAIHRIRIMLTSRNVKSLEEVCVDLIRGAKEKNLKVKGPVSMPTKTLRITTRKTPC |
Parental | GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD |
GEGSKTWDRFQMRIHK.LIDLHSPSEIVK.ITSI.IEPGVEVEVTIAD | |
Retrocopy | GEGSKTWDRFQMRIHK*LIDLHSPSEIVKKITSICIEPGVEVEVTIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 46 .61 RPM |
SRP007412_cerebellum | 0 .09 RPM | 22 .67 RPM |
SRP007412_heart | 0 .12 RPM | 59 .96 RPM |
SRP007412_kidney | 0 .15 RPM | 59 .75 RPM |
SRP007412_liver | 0 .11 RPM | 64 .78 RPM |
SRP007412_testis | 0 .18 RPM | 106 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_45168 | 220 libraries | 436 libraries | 371 libraries | 38 libraries | 7 libraries |