RetrogeneDB ID: | retro_itri_1599 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393564.1:278868..279364(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSSTOG00000023986 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 93.98 % |
Parental protein coverage: | 89.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSD |
YVVEKVLDRRV.KGKVEYLLKWKGFS.EDNTWEPEENLDCPDLIAEFL.SQKTAHETDKSEG.KRKADSD | |
Retrocopy | YVVEKVLDRRVLKGKVEYLLKWKGFSHEDNTWEPEENLDCPDLIAEFL*SQKTAHETDKSEGSKRKADSD |
Parental | SEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVV |
.EDKGEESKPKKKKEESEKPRGFA.GLEPERIIGATDS.GELMFLMKWKNSDEADLVPAKEANVKCPQVV | |
Retrocopy | TEDKGEESKPKKKKEESEKPRGFAWGLEPERIIGATDSNGELMFLMKWKNSDEADLVPAKEANVKCPQVV |
Parental | ISFYEERLTWHSYPSEDDD-KKDDKN |
ISFYEERL..HSYPSEDDD.KKDDKN | |
Retrocopy | ISFYEERLRRHSYPSEDDD>KKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |