RetrogeneDB ID: | retro_itri_1867 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394276.1:33522..34021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000026730 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSSTOG00000023986 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 82.84 % |
Parental protein coverage: | 89.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YVVEKVLDR-RVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLI-AEFLQSQKTAHETDKSEGGKRKAD |
YVVEKVL.....VK.KVEYLLKWKGFSDED.TWEPEE.L.CP.L..AEFLQSQKTAHETDKS.GGK.K.D | |
Retrocopy | YVVEKVLHH<SIVKSKVEYLLKWKGFSDEDSTWEPEEKLYCPNLL<AEFLQSQKTAHETDKSKGGKHKVD |
Parental | SDSEDKGEESKPKKKKEESEKPRGFARGLEPER--IIGATDSSGELMFLMKWKNSDEADLVPAKEANVKC |
SDSE.KGEE.KPKKKKEESE.PRGFARGLEPE...I.GATD.SGELMFLMKWKNSDE.D.VPAKEAN..C | |
Retrocopy | SDSENKGEETKPKKKKEESENPRGFARGLEPEPEPIFGATDFSGELMFLMKWKNSDETDVVPAKEANIRC |
Parental | PQVVISFYEERLTWHSYPSEDDDKKDDKN |
PQVVISFYE.RL.WHSYPSEDDDKKDDKN | |
Retrocopy | PQVVISFYEKRLRWHSYPSEDDDKKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |