RetrogeneDB ID: | retro_amel_1281 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193145.1:734216..734616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000003497 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.12 % |
Parental protein coverage: | 65.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KYIQELWRKKQSDVMRFLLRVRC-WQYRQLSALHR-APRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRK |
.YIQELWR.KQS.V...LLR....WQ.RQLS.LH..AP.P..P.K..RL..KAK.GYVIY.I.V.RGG.K | |
Retrocopy | RYIQELWRQKQSSVTCSLLRAHA<WQDRQLSGLHE<APCPAHPNKVHRLEHKAKPGYVIYQIHVCRGGCK |
Parental | RPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDSL |
.PVPKG.TY.KPVHHG.N.LK...S.QSVAEE.AG.HCGALRVLN.YWVG.DSTYKFFEVILI.S. | |
Retrocopy | HPVPKGVTYNKPVHHGANWLKCDQSPQSVAEEPAGSHCGALRVLNYYWVGKDSTYKFFEVILIHSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |