RetrogeneDB ID: | retro_ecab_38 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 13:15630434..15631049(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000001455 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010157 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKY.QELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRG. | |
Retrocopy | MGAYKYNQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGD |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
RKRPVP.GATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVG.DSTYKFFEVILIDPFHK | |
Retrocopy | RKRPVPEGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGKDSTYKFFEVILIDPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
AIRRNPDTQWITKPVHKHREMRGLTSA.RKS.GLGKGHKFHHTIGGSR.AAWRRRNTLQLHRYR | |
Retrocopy | AIRRNPDTQWITKPVHKHREMRGLTSADRKSHGLGKGHKFHHTIGGSRSAAWRRRNTLQLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 2 .01 RPM | 595 .37 RPM |
SRP021940_cerebellum | 0 .99 RPM | 295 .65 RPM |
SRP021940_embryo | 2 .38 RPM | 397 .09 RPM |
SRP021940_placental_villous | 0 .72 RPM | 221 .60 RPM |
SRP021940_synovial_membrane | 2 .25 RPM | 338 .21 RPM |
SRP021940_testis | 1 .15 RPM | 158 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001114 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy |
retro_ecab_38 ,
|
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |