Parental gene:

RPL15, ENSPPYG00000014065

Aliases:None
Description:60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0]
Organism:Orangutan (Pongo abelii)
Coordinates:3:123407883..123411586(-)


>ENSPPYG00000014065
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACCATTGGTGGCTC
TCGCCGGGCTGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 280 .66 RPM
SRP007412_cerebellum 291 .84 RPM
SRP007412_heart 125 .17 RPM
SRP007412_kidney 300 .97 RPM
SRP007412_liver 241 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003497 ortholog_one2one 6 retrogenes
retro_amel_1281, retro_amel_1470, retro_amel_1519, retro_amel_516, retro_amel_548, retro_amel_712,
Callithrix jacchus ENSCJAG00000003810 ortholog_one2one 23 retrogenes
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
Equus caballus ENSECAG00000010157 ortholog_one2one 1 retrogene
retro_ecab_38,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Pan troglodytes ENSPTRG00000014695 ortholog_one2one 14 retrogenes
retro_ptro_1178, retro_ptro_1646, retro_ptro_1942, retro_ptro_2064, retro_ptro_2090, retro_ptro_2483, retro_ptro_2572, retro_ptro_435, retro_ptro_459, retro_ptro_550, retro_ptro_646, retro_ptro_663, retro_ptro_886, retro_ptro_991,
Pteropus vampyrus ENSPVAG00000001771 ortholog_one2one 13 retrogenes
retro_pvam_1016, retro_pvam_1067, retro_pvam_1178, retro_pvam_1280, retro_pvam_1386, retro_pvam_1422, retro_pvam_176, retro_pvam_338, retro_pvam_397, retro_pvam_538, retro_pvam_634, retro_pvam_766, retro_pvam_83,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,
Vicugna pacos ENSVPAG00000008573 ortholog_one2one 2 retrogenes
retro_vpac_34, retro_vpac_522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_561 84.06 98.53
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2. retro_pabe_597 80.67 58.33
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3. retro_pabe_642 83.09 98.53
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4. retro_pabe_705 84.73 99.51
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5. retro_pabe_801 79.61 74.51
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6. retro_pabe_816 85.29 100.00
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7. retro_pabe_1073 89.81 100.00
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8. retro_pabe_1201 87.50 54.90
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9. retro_pabe_1480 71.52 77.45
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10. retro_pabe_1896 90.59 99.02
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11. retro_pabe_2049 92.57 99.02
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12. retro_pabe_2377 84.39 99.51
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13. retro_pabe_2433 91.22 100.00
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14. retro_pabe_2467 93.17 99.51
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15. retro_pabe_2562 83.77 93.63
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16. retro_pabe_3004 83.66 75.00
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17. retro_pabe_3028 57.24 74.02
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18. retro_pabe_3098 81.41 76.47
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Download FASTA sequences of all ENSPPYG00000014065 retrocopies