RetrogeneDB ID: | retro_pabe_2433 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:49209017..49209628(+) | ||
Located in intron of: | ENSPPYG00000029738 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 91.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWR.KQSDVMRFLLRVRCWQYRQLSALHRAPR.T.PDKA.RL.YKAKQGYVIYRIRVRRGG | |
Retrocopy | MGAYKYIQELWRRKQSDVMRFLLRVRCWQYRQLSALHRAPRRTQPDKAHRLDYKAKQGYVIYRIRVRRGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFAR-SLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
.KRPVPKGAT.GKPVHHGVNQLKFA..SLQSVAEE..G.HCGALRVLNSYWVGEDSTYKFFEVILIDPFH | |
Retrocopy | QKRPVPKGAT*GKPVHHGVNQLKFAQ<SLQSVAEE*GGCHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
Parental | KAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR |
KAIRRNPDTQWITKPVHKHREM.GLTSAGRKSRGLGKGHK.HHT.GGSR.AAWRRR.TLQLH.YR | |
Retrocopy | KAIRRNPDTQWITKPVHKHREMHGLTSAGRKSRGLGKGHKLHHTLGGSRWAAWRRRSTLQLHHYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 291 .84 RPM |
SRP007412_heart | 0 .09 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .07 RPM | 300 .97 RPM |
SRP007412_liver | 2 .39 RPM | 241 .14 RPM |