RetrogeneDB ID: | retro_pabe_2467 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:123306944..123307551(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 93.17 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVR-RG |
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAP.PT.PDKA...GYK.KQGYVIYRIRV..RG | |
Retrocopy | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPHPTQPDKAHQPGYKTKQGYVIYRIRVA<RG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
G.KRPV.KGATYGKPVHHGVNQLKFARSLQSVAEERAG.HCGALRVLNSYWVGEDSTYKFFEVILIDPFH | |
Retrocopy | GLKRPVSKGATYGKPVHHGVNQLKFARSLQSVAEERAGCHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
Parental | KA-IRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
KA.IRRNPDTQWITKPVHKHREM.GLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRR.NTLQLHRY | |
Retrocopy | KA<IRRNPDTQWITKPVHKHREMHGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRHNTLQLHRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .24 RPM | 291 .84 RPM |
SRP007412_heart | 0 .03 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .13 RPM | 300 .97 RPM |
SRP007412_liver | 0 .18 RPM | 241 .14 RPM |