RetrogeneDB ID: | retro_pvam_397 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_2925:111995..112535(+) | ||
Located in intron of: | ENSPVAG00000004518 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPVAG00000001771 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 77.17 % |
Parental protein coverage: | 88.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRP-DKARRLGYKAKQGYVIYR-IRVRR |
MGAYKYIQE.WR...SDV.RF.LRVR.WQY.QLSALHRAP.PT.P.DKA.RLG.K.K.GY.IYR...V.. | |
Retrocopy | MGAYKYIQERWRM*PSDVVRFILRVRHWQYCQLSALHRAPWPTHP<DKALRLGHKPKKGYAIYR<VHVHH |
Parental | GGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF |
GG.K.PVPKGATYGKPVHH.VNQ.KFARSLQSV..E.A..HCGALRVLNSYWVGEDS.YKFFEVILI.PF | |
Retrocopy | GGHKCPVPKGATYGKPVHHSVNQIKFARSLQSVSKEQAEHHCGALRVLNSYWVGEDSSYKFFEVILIYPF |
Parental | HKAIRRNPDTQWITKPVH-KHREMRGLTSAGRKSRGLGKGHKFH |
HKAIR.NPDTQ..TKPVH..HREM.GL.S.G.KSRGL.KGHKFH | |
Retrocopy | HKAIRQNPDTQQVTKPVH<QHREM*GLPSTGCKSRGLRKGHKFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |