RetrogeneDB ID: | retro_cjac_4185 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:69116351..69116958(-) | ||
Located in intron of: | ENSCJAG00000004052 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003810 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.82 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGY-VIYRIRVRRG |
MGAYKYIQELWRKKQS.VM.FLLRV.CWQY.QLSALHR.P.P..PDKA..LGYKAKQGY..I.RI.VR.G | |
Retrocopy | MGAYKYIQELWRKKQSGVMCFLLRVCCWQYCQLSALHRTPHPI*PDKAHQLGYKAKQGY>IIHRISVRHG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
G.KRPVPK.ATYGKPVHH.VNQLKFARSLQSVAEE.AG.HC.ALRVLNS.WV.EDST.KFFE.ILIDPF. | |
Retrocopy | G*KRPVPKSATYGKPVHHDVNQLKFARSLQSVAEEQAGYHCWALRVLNSHWV-EDST*KFFEIILIDPFQ |
Parental | KAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHHY |
KAIRRNPDTQWITKPVHKH.EM.GLTSAG.KSRGLGKGHKFH.TIGGSRR.AWRR.NTLQLH.Y | |
Retrocopy | KAIRRNPDTQWITKPVHKHTEMCGLTSAGQKSRGLGKGHKFHYTIGGSRRTAWRRCNTLQLHCY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .31 RPM | 57 .58 RPM |
SRP051959_heart | 0 .30 RPM | 53 .55 RPM |
SRP051959_kidney | 0 .33 RPM | 53 .38 RPM |
SRP051959_liver | 0 .19 RPM | 76 .16 RPM |
SRP051959_lung | 0 .73 RPM | 50 .87 RPM |
SRP051959_lymph_node | 0 .37 RPM | 60 .41 RPM |
SRP051959_skeletal_muscle | 0 .20 RPM | 53 .94 RPM |
SRP051959_spleen | 0 .57 RPM | 60 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185 , retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |