RetrogeneDB ID: | retro_pabe_801 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:112859999..112860452(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 79.61 % |
Parental protein coverage: | 74.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELW.KKQSDV..FLL.V.CWQY.QLSALHR.P.PT.PDKA..LGYKAK..Y.IYRI..R.G. | |
Retrocopy | MGAYKYIQELW-KKQSDVLHFLLKVGCWQYCQLSALHRDPHPTWPDKACQLGYKAKKSYIIYRICKRHGD |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.K.PVPKGATYGKPVHH.VNQL.FA.SLQS.AEE.AG.HCG.LRVLNS.WVGEDS.YKF.EVILIDPFHK | |
Retrocopy | QKCPVPKGATYGKPVHHDVNQLEFA*SLQSTAEE*AGHHCGTLRVLNSNWVGEDSMYKFLEVILIDPFHK |
Parental | AIRRNPDTQWIT |
AIRRNPDTQ.IT | |
Retrocopy | AIRRNPDTQ*IT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 291 .84 RPM |
SRP007412_heart | 0 .00 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 300 .97 RPM |
SRP007412_liver | 0 .00 RPM | 241 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_930 |
Pan troglodytes | retro_ptro_646 |
Callithrix jacchus | retro_cjac_890 |