RetrogeneDB ID: | retro_ptro_646 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:113849756..113850362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPTRG00000014695 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 79.31 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELW.K.QSDV..FLL.V.CWQY..LSALHR.P.PT.PDKA..LGYKAKQ.Y.IYRI..R.GG | |
Retrocopy | MGAYKYIQELW-KRQSDVLHFLLKVGCWQYCRLSALHRDPHPTWPDKACQLGYKAKQSYIIYRICMRHGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.K.PVPK.ATYGKPV.H.VNQL.FA.SLQS.AEE.AG.HCGALRVLNS.WVGEDSTYKF.EVILIDPFHK | |
Retrocopy | QKCPVPKSATYGKPVDHDVNQLGFA*SLQSTAEE*AGHHCGALRVLNSNWVGEDSTYKFLEVILIDPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
AIRRNPDTQ.ITKPV.KHREM.GLTSAG.KS.GLGKGHKFHH..GGSR.A.WRR.NT.QL.RY | |
Retrocopy | AIRRNPDTQ*ITKPVRKHREMHGLTSAG*KSHGLGKGHKFHHALGGSRWATWRRHNTFQLYRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 384 .18 RPM |
SRP007412_cerebellum | 0 .14 RPM | 392 .25 RPM |
SRP007412_heart | 0 .00 RPM | 133 .81 RPM |
SRP007412_kidney | 0 .08 RPM | 397 .82 RPM |
SRP007412_liver | 0 .03 RPM | 190 .71 RPM |
SRP007412_testis | 0 .00 RPM | 185 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_930 |
Pongo abelii | retro_pabe_801 |
Callithrix jacchus | retro_cjac_890 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |