RetrogeneDB ID: | retro_pabe_1480 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:11002900..11003374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 71.52 % |
Parental protein coverage: | 77.45 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVL |
.A..L..KAK.GYVIYRI.V..GG.K.PVPKG.TY..PVH..VN.LKFARSL...AEE.AG...G.LR.L | |
Retrocopy | QAHGLR*KAKPGYVIYRIHVPHGGQKHPVPKGETYSNPVHPDVNKLKFARSLWFIAEE*AGCYRGPLRGL |
Parental | NSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGG |
NS.WVG.DS.YKFFEVILID.FHKA.RRNPDT..IT.PVHKHREM.GL..AG.KS.GLGK..KFHHTI.G | |
Retrocopy | NSHWVGKDSSYKFFEVILIDTFHKAVRRNPDTL*ITIPVHKHREMNGLIAAG*KSCGLGKARKFHHTISG |
Parental | SRRAAWRRRNTLQLHRYR |
S..AAWRRRNTL.LHRYR | |
Retrocopy | SHSAAWRRRNTLWLHRYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .12 RPM | 291 .84 RPM |
SRP007412_heart | 0 .03 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 300 .97 RPM |
SRP007412_liver | 0 .00 RPM | 241 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1804 |
Pan troglodytes | retro_ptro_1178 |
Gorilla gorilla | retro_ggor_1327 |
Callithrix jacchus | retro_cjac_2532 |