RetrogeneDB ID: | retro_pabe_2377 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:161482278..161482885(-) | ||
Located in intron of: | ENSPPYG00000014242 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 84.39 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQELWRK.....MRFLLRVRCWQYRQLSALHRAP.P..PDK.RRLGYKAK..YVIY.I..R.GG | |
Retrocopy | MGAYKYIQELWRKQSDVIMRFLLRVRCWQYRQLSALHRAPHPIQPDKLRRLGYKAKKSYVIYKIHIRHGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSL-QSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFH |
RKRPVPKGATYGKPVHHGVNQLKFA.S..QSVAEE.AGRHCGA.RVLNSYWVGEDST..FFE.ILIDPFH | |
Retrocopy | RKRPVPKGATYGKPVHHGVNQLKFAHSV<QSVAEE*AGRHCGAVRVLNSYWVGEDST*TFFEAILIDPFH |
Parental | KAIRRNPDTQ-WITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
K.IRRNPDT..WIT.PVHKHREM.GLTSAG.KSRGL.KGHKFHHTI.GSR.AAWRRRNTLQLHRY | |
Retrocopy | KTIRRNPDTH<WITEPVHKHREMCGLTSAGQKSRGL*KGHKFHHTISGSRQAAWRRRNTLQLHRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 291 .84 RPM |
SRP007412_heart | 0 .00 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 300 .97 RPM |
SRP007412_liver | 0 .00 RPM | 241 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2870 |
Pan troglodytes | retro_ptro_1942 |