Parental gene: | ENSCJAG00000003810 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 17:54574276..54577070(+) |
>ENSCJAG00000003810
ATGGGTGCATACAAGTATATCCAGGAGTTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TATGGCAAGCCTGTCCATCATGGTGTTAACCAGCTGAAGTTTGCTCGAAGCCTTCAGTCTGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGCGAAGATTCCACATACAAATTTTTTGAGGTTATTC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAATGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACTATTGGTGGTTC
TCGCCGGGCAGCTTGGAGAAGGCGTAATACTCTCCAGCTCCACCATTACCGCTAA
ATGGGTGCATACAAGTATATCCAGGAGTTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TATGGCAAGCCTGTCCATCATGGTGTTAACCAGCTGAAGTTTGCTCGAAGCCTTCAGTCTGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGCGAAGATTCCACATACAAATTTTTTGAGGTTATTC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAATGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACTATTGGTGGTTC
TCGCCGGGCAGCTTGGAGAAGGCGTAATACTCTCCAGCTCCACCATTACCGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 60 .46 RPM |
| SRP051959_skeletal_muscle | 53 .94 RPM |
| SRP051959_lymph_node | 60 .41 RPM |
| SRP051959_lung | 50 .87 RPM |
| SRP051959_liver | 76 .16 RPM |
| SRP051959_kidney | 53 .38 RPM |
| SRP051959_heart | 53 .55 RPM |
| SRP051959_colon | 57 .58 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003497 | ortholog_one2one | 6 retrogenes | |
| Equus caballus | ENSECAG00000010157 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000004155 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011995 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014065 | ortholog_one2one | 18 retrogenes | |
| Pan troglodytes | ENSPTRG00000014695 | ortholog_one2one | 14 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000001771 | ortholog_one2one | 13 retrogenes | |
| Tursiops truncatus | ENSTTRG00000007244 | ortholog_one2many | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000008573 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_506 | 79.43 | 68.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_585 | 75.00 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_712 | 95.71 | 68.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_734 | 75.76 | 64.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_783 | 80.30 | 94.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_890 | 69.95 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1052 | 98.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_1270 | 92.70 | 66.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_1316 | 83.54 | 80.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_1553 | 95.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cjac_1578 | 75.43 | 85.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cjac_1625 | 90.69 | 99.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cjac_1668 | 79.88 | 79.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cjac_1741 | 83.43 | 88.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_cjac_2143 | 80.95 | 80.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_cjac_2330 | 91.13 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_cjac_2518 | 97.55 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_cjac_2532 | 71.65 | 62.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_cjac_2599 | 73.39 | 59.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_cjac_2821 | 77.07 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_cjac_2907 | 82.74 | 81.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 22. | retro_cjac_3807 | 88.73 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 23. | retro_cjac_4185 | 83.82 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003810 retrocopies