Parental gene: | RPL15, ENSPTRG00000014695 |
| Aliases: | None |
| Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 3:24317086..24320054(+) |
>ENSPTRG00000014695
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TACGGCAAGCCTGTACATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACTATTGGTGGCTC
TCGCCGGGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TACGGCAAGCCTGTACATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACTATTGGTGGCTC
TCGCCGGGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 384 .18 RPM |
| SRP007412_cerebellum | 392 .25 RPM |
| SRP007412_heart | 133 .81 RPM |
| SRP007412_kidney | 397 .82 RPM |
| SRP007412_liver | 190 .71 RPM |
| SRP007412_testis | 185 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003497 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000003810 | ortholog_one2one | 23 retrogenes |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
| Equus caballus | ENSECAG00000010157 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011995 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014065 | ortholog_one2one | 18 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000001771 | ortholog_one2one | 13 retrogenes | |
| Tursiops truncatus | ENSTTRG00000007244 | ortholog_one2one | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000008573 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_435 | 81.20 | 57.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_459 | 86.42 | 78.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_550 | 85.22 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_646 | 79.31 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_663 | 85.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_886 | 88.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_991 | 84.21 | 55.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_1178 | 72.12 | 80.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_1646 | 87.86 | 84.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_1942 | 82.44 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ptro_2064 | 95.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ptro_2090 | 85.41 | 90.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ptro_2483 | 83.12 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ptro_2572 | 81.86 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000014695 retrocopies