RetrogeneDB ID: | retro_cjac_890 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:13519840..13520440(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003810 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.95 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
M.A.KYIQELWRKK.SD....LL.VRCWQ..QLSAL.RAP.PT.PDKA..LGYKAKQG..IYRI.V..GG | |
Retrocopy | MDACKYIQELWRKK*SDILCCLLKVRCWQ*HQLSALYRAPHPTWPDKACQLGYKAKQG*IIYRICVCHGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.K.PVPKG.TYGKPVH.GV.QLKFA.SLQS.AE..AG.HCGAL.VLN..WVGEDS.Y.FF.VILIDP.H. | |
Retrocopy | QKCPVPKGTTYGKPVHYGVKQLKFAQSLQSAAEG*AGHHCGAL*VLNC*WVGEDSAYTFFKVILIDPYHR |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHHY |
.IR...DTQWITKPVHKHREM.GL......S.GL.K.H.FHH.IGGS..AA.RR.NT.QL..Y | |
Retrocopy | DIRKDADTQWITKPVHKHREMPGLQA---ESCGLRKAHTFHHAIGGSHYAACRRHNTFQLYCY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 57 .58 RPM |
SRP051959_heart | 0 .00 RPM | 53 .55 RPM |
SRP051959_kidney | 0 .00 RPM | 53 .38 RPM |
SRP051959_liver | 0 .00 RPM | 76 .16 RPM |
SRP051959_lung | 0 .03 RPM | 50 .87 RPM |
SRP051959_lymph_node | 0 .05 RPM | 60 .41 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 53 .94 RPM |
SRP051959_spleen | 0 .02 RPM | 60 .46 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_930 |
Pan troglodytes | retro_ptro_646 |
Pongo abelii | retro_pabe_801 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890 ,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |