RetrogeneDB ID: | retro_pvam_176 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_175:357039..357643(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPVAG00000001771 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 78.54 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDK-ARRLGYKAKQGYVIYRIRVRRG |
MGAYKYIQELWRKKQSDV..FLLR..CWQYRQLSALH..PR.TRP.K.ARRLGYKAKQGYV..RI.VR.G | |
Retrocopy | MGAYKYIQELWRKKQSDVVCFLLRASCWQYRQLSALHKVPRSTRPIK<ARRLGYKAKQGYVMHRICVRHG |
Parental | GR-KRP-VPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDP |
GR.K.P.VPK.A.YG.P.H.GVNQLKFA.SL.SVAEE.AG.HCGAL.V.NSYW.GEDST.KFFE.ILID. | |
Retrocopy | GR>KMP>VPKDAIYGMPLH-GVNQLKFAGSLRSVAEE*AGCHCGALTVPNSYWLGEDST*KFFEAILIDL |
Parental | FHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHR |
FHK.IR.NPDT.WITKPVHKHREMR.LTSA...SRGLGKGHKFHH.IGGS...AWRR.N.LQLHR | |
Retrocopy | FHKVIRWNPDTEWITKPVHKHREMRRLTSACCESRGLGKGHKFHHPIGGSCGVAWRRSNALQLHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |