Parental gene:

ENSECAG00000010157

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:16:58997557..59000122(-)


>ENSECAG00000010157
ATGGGCGCTTACAAGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCGGACGTGATGCGATTTCTTCTCAGGGTGCGCTG
CTGGCAGTACCGCCAGCTCTCGGCGCTCCACAGGGCGCCCCGCCCCACCCGGCCCGATAAGGCGCGCAGACTGGGCTACA
AGGCCAAGCAAGGTTATGTCATATATCGCATTCGTGTGCGCCGTGGTGGCCGCAAACGCCCCGTTCCTAAGGGCGCGACC
TACGGCAAGCCTGTGCATCATGGTGTTAACCAGCTCAAGTTTGCTCGAAGCCTTCAGTCTGTTGCCGAGGAACGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTTCTGAATTCTTACTGGGTTGGCGAAGATTCCACATACAAATTCTTTGAGGTGATCC
TCATTGATCCATTCCATAAGGCTATTAGAAGAAATCCTGATACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAA
ATGAGAGGGCTGACATCTGCAGGCCGCAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGTTC
TCGCCGTGCAGCTTGGAGAAGGCGCAATACTCTGCAGCTTCACCGTTACCGCTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 338 .21 RPM
SRP021940_embryo 397 .09 RPM
SRP021940_cerebellum 295 .65 RPM
SRP021940_testis 158 .64 RPM
SRP021940_placental_villous 221 .60 RPM
SRP021940_articular_cartilage 595 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003497 ortholog_one2one 6 retrogenes
retro_amel_1281, retro_amel_1470, retro_amel_1519, retro_amel_516, retro_amel_548, retro_amel_712,
Choloepus hoffmanni ENSCHOG00000001114 possible_ortholog 6 retrogenes
retro_chof_1201, retro_chof_1253, retro_chof_1323, retro_chof_2246, retro_chof_357, retro_chof_877,
Callithrix jacchus ENSCJAG00000003810 ortholog_one2one 23 retrogenes
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Pongo abelii ENSPPYG00000014065 ortholog_one2one 18 retrogenes
retro_pabe_1073, retro_pabe_1201, retro_pabe_1480, retro_pabe_1896, retro_pabe_2049, retro_pabe_2377, retro_pabe_2433, retro_pabe_2467, retro_pabe_2562, retro_pabe_3004, retro_pabe_3028, retro_pabe_3098, retro_pabe_561, retro_pabe_597, retro_pabe_642, retro_pabe_705, retro_pabe_801, retro_pabe_816,
Pan troglodytes ENSPTRG00000014695 ortholog_one2one 14 retrogenes
retro_ptro_1178, retro_ptro_1646, retro_ptro_1942, retro_ptro_2064, retro_ptro_2090, retro_ptro_2483, retro_ptro_2572, retro_ptro_435, retro_ptro_459, retro_ptro_550, retro_ptro_646, retro_ptro_663, retro_ptro_886, retro_ptro_991,
Pteropus vampyrus ENSPVAG00000001771 ortholog_one2one 13 retrogenes
retro_pvam_1016, retro_pvam_1067, retro_pvam_1178, retro_pvam_1280, retro_pvam_1386, retro_pvam_1422, retro_pvam_176, retro_pvam_338, retro_pvam_397, retro_pvam_538, retro_pvam_634, retro_pvam_766, retro_pvam_83,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,
Vicugna pacos ENSVPAG00000008573 ortholog_one2one 2 retrogenes
retro_vpac_34, retro_vpac_522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_38 96.57 100.00
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Download FASTA sequences of all ENSECAG00000010157 retrocopies