RetrogeneDB ID: | retro_itri_1212 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393402.1:706063..706424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 62.1 % |
Parental protein coverage: | 65.95 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | QCVPFRRYNGGVGRCAQQAKQWGWTQGRWPKKSAEFLLH-MLKNAESNAELKGLDVDSLVIEHIQVNKAP |
QCVPF...NG.VG.CA..AKQWG..Q...P.KSAEFL.H..LKN.ES.A.L.G.DV.SLVI.HIQV..AP | |
Retrocopy | QCVPFWDSNGEVGKCA*-AKQWG*AQDW*PQKSAEFLWH<LLKNSESGAKL*GVDVASLVIKHIQVSGAP |
Parental | KMRRRTYRAHGRINPYMS-SPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLK |
KM.....RAHG.IN..M..S.CHIEMILTEKEQI.P...E..A.KKKIS....K | |
Retrocopy | KMYSYPSRAHG*INSCMN<SLCHIEMILTEKEQITPESQEGLA*KKKISEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |