RetrogeneDB ID: | retro_itri_816 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393327.1:9623655..9623947(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 71.15 % |
Parental protein coverage: | 55.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVRYSLD-PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPF-RRYNGGVG |
...YSLD.PENP.KSCK...SNL.VHFKNT.ETAQAIK.MH...ATKYLKD.TLKKQCVPF.R.YNGGVG | |
Retrocopy | IICYSLD<PENPIKSCKTKISNLHVHFKNTHETAQAIKDMH---ATKYLKDITLKKQCVPF<RCYNGGVG |
Parental | RCAQQAKQWGWTQGRWPKKSAEFLLHMLKNAESN |
RC...AKQWG..QG.W.KKS.EFLLHML.....N | |
Retrocopy | RCT-RAKQWG*IQGWWSKKSPEFLLHMLGHIQVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |