RetrogeneDB ID: | retro_itri_621 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393306.1:8081857..8082182(-) | ||
Located in intron of: | ENSSTOG00000008795 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 72.32 % |
Parental protein coverage: | 59.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VPFRRYNGGVGRCAQQAKQW-GWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKM |
VPFR.YN.G.GR.AQ.A.QW.GWTQ..WP.K..EF.LH.LKNAESNAELK.L.VDSLVIE.I.VN.APK. | |
Retrocopy | VPFRHYNSGDGRFAQ-ANQW<GWTQS*WPRKRSEFWLHILKNAESNAELKDLVVDSLVIEYIHVNTAPKV |
Parental | RRRTYRAHGRINPYMSSPC-HIEMILTEKEQIVPKPEEEVAQ |
....YRAH.RIN.YM.SP..HIEM.LTEKEQ.VPKPEEEVAQ | |
Retrocopy | HHNAYRAHDRINTYMRSPT<HIEMSLTEKEQTVPKPEEEVAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |