RetrogeneDB ID: | retro_itri_213 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393279.1:40907466..40907760(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 57. % |
Parental protein coverage: | 54.05 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
.VRYSLD.ENP.KSC..R.SNL..HFKNT.ETA....GM.I.K.TK.LK.VT.....V.F..Y...V... | |
Retrocopy | VVRYSLDQENPEKSCRLRDSNLHIHFKNTSETAHTTEGMYI*KNTKCLKVVT*RSS-V*FQHYHRAVEKY |
Parental | AQQAKQWGWTQGRWPKKSAEFLLHMLKNAE |
.Q..KQ...TQG..PKKSAEF.LH.LK.AE | |
Retrocopy | TQ-VKQCS*TQGQ*PKKSAEFVLHILKHAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |