RetrogeneDB ID: | retro_itri_625 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393307.1:7551807..7552360(+) | ||
Located in intron of: | ENSSTOG00000000075 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 69.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAI-KGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGR |
MV.YSLDPEN.TKSC.SRGS.L..HFK.T.ET..AI...MH..KA.K.LKD.TLK.QCV.F..Y..GVG. | |
Retrocopy | MVCYSLDPENSTKSCDSRGSSLHIHFKDTWETVKAI>QSMHSQKASKHLKDITLKNQCVLFQSYSDGVGM |
Parental | CAQQAKQWGWTQG-RWPKKSAEFLLHMLKNAE-SNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRI |
CA..AK..G.T.G..WPKKSAEFLLHM.KNAE...AELKGLDVDSLVIE.IQV.KAP.M...T.R.HG.I | |
Retrocopy | CA*-AKYKG*T*G>QWPKKSAEFLLHMFKNAE<VMAELKGLDVDSLVIENIQVSKAPRMYCCT*RVHGPI |
Parental | NPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE |
NPY.SS.C.IEMIL.EKEQIVPK.EEEVAQKKKI.QKK.KKQK..A.. | |
Retrocopy | NPYVSSLCPIEMILIEKEQIVPKQEEEVAQKKKIPQKKMKKQKQLAQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |