RetrogeneDB ID: | retro_itri_1479 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393501.1:2582901..2583450(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023143 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 96.74 % |
Parental protein coverage: | 99.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
MVRYSLDPENPTKSCK.RGSNLRVHFKNT.ETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC | |
Retrocopy | MVRYSLDPENPTKSCKARGSNLRVHFKNTHETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
Parental | AQQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPY |
AQ.AKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKM...TYRAHGRINPY | |
Retrocopy | AQ-AKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMCCHTYRAHGRINPY |
Parental | MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR |
MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR | |
Retrocopy | MSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |