RetrogeneDB ID: | retro_itri_601 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:12742414..12742964(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 61.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
MV.YSLDPE..TKSC.S..SN....FKNT.E.AQ.I..MHI.KATKY.KDVT..KQ..P...YNGG..RC | |
Retrocopy | MVYYSLDPESLTKSCTSGDSNIYIQFKNTHEAAQTIECMHIQKATKYPKDVTS*KQHLPVLGYNGGADRC |
Parental | AQQAKQWGWTQ-GRWPKKSAE-FLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRIN |
A.QAKQWGW.Q...WPK.SA..FLLH..KNA.S...L.G.....LV.EHIQVNKAP.M...TYR.HG.IN | |
Retrocopy | A-QAKQWGWVQ<DQWPKNSAN>FLLHIFKNAKSCLTL-GFRCRPLVTEHIQVNKAPEMHCHTYRTHGWIN |
Parental | PYMSS-PCHI-EMILTEKEQIVPKPEEEVAQKKKISQKKLKKQ-KLMARE |
PY.SS.PCH..EMIL.E...I.PKP.E......KISQ.K.KKQ.KLMA.E | |
Retrocopy | PYPSSFPCHM<EMILLERKKILPKPDEVIVR*EKISQNKPKKQ<KLMAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |