RetrogeneDB ID: | retro_itri_708 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393313.1:12076940..12077276(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 58.33 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | QAKQWGWTQGRWPK-KSAEFLLH-MLKNAESNAELKG-LDVDSLVIEHIQVNKAP-KMRRRTYRAHGRIN |
QA.QWG..QG..PK.KSAE.LLH.......SN.E.KG.LDVDSL..EH...NK.P.K....TYRAHG... | |
Retrocopy | QARQWGKIQG*CPK<KSAEYLLH<QCLKMHSNTEFKG<LDVDSLISEHTLMNKEP<KVHHHTYRAHGQTH |
Parental | PYMSSPC-HIEMILTEKEQIVPKP-EEEVAQKK-KISQKKLKKQKLMARE |
PY.SS...H.EM.LTE.E.I.P.P.EE....K..KISQKKLKKQKLM..E | |
Retrocopy | PYLSSST<HPEMVLTETEKIDPRPEEEVAQNKQ<KISQKKLKKQKLMKWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |