RetrogeneDB ID: | retro_itri_1015 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393359.1:3343816..3344158(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 94.78 % |
Parental protein coverage: | 62.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRC |
MVRYSLDPENPTKSCKSRGSNL.VHFKNT.ETAQAIKGMHIRKATKYLKDVTLK.QCVPFRRYNGGVGRC | |
Retrocopy | MVRYSLDPENPTKSCKSRGSNLHVHFKNTCETAQAIKGMHIRKATKYLKDVTLKMQCVPFRRYNGGVGRC |
Parental | AQQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI |
A.QAKQWGWTQG..PKKSAEFLLHMLKNAESNAELKGLDVDSLVI | |
Retrocopy | A-QAKQWGWTQGWRPKKSAEFLLHMLKNAESNAELKGLDVDSLVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |