RetrogeneDB ID: | retro_itri_575 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393302.1:16169629..16169980(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 51.24 % |
Parental protein coverage: | 64.32 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQQAKQWGWTQGRWP-KKSAEFLLHMLKNA |
E.AQA...MHI.KATK.LK..TLKK....F..YNGGV.R.AQ..K..G.T...WP.K....F....L... | |
Retrocopy | EIAQALR*MHIQKATKNLKVMTLKKYPGTFHHYNGGVFRRAQD-K**GCTKVGWP>KRGLNFYCMCLET- |
Parental | ESNAELKGLDVDSLVIEHIQV-NKAPKMRRRTYRAHGRINPYMSSPCHIEM |
..NA....L.V.SL..EHIQ..NK.PK....TYRAHG.IN..MSS.C.IE. | |
Retrocopy | QNNAAIQSLEVGSLGNEHIQG<NKIPKVP*HTYRAHGQINLCMSSLCNIEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |