RetrogeneDB ID: | retro_itri_949 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393348.1:1621458..1621810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 54.17 % |
Parental protein coverage: | 64.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | YLKDVTLKKQCVPFRRYNGGVGRCAQQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIE |
Y.K..TLK..CVP...YN..V.RCA.QAKQWGWTQG.WPK.SAE..LH.LKN.E.NA.L..L.VDSLV.. | |
Retrocopy | YEKNATLKN*CVPLWHYNDRVWRCA-QAKQWGWTQGQWPKRSAEYWLHVLKNVENNAKLENLNVDSLVVK |
Parental | HIQVNKAPKMRRRTY-RAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEV |
H.Q.NK.P.M...T..RAHG.INP..SS..H............PK....V | |
Retrocopy | HPQGNKVPSMCCCTQ>RAHG-INP*VSSLPH*DHPHWLLSKLLPKQKRRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |