Parental gene:

RPL17, ENSSTOG00000005193

Aliases:None
Description:ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393307.1:13457284..13460615(+)


>ENSSTOG00000005193
ATGGTCCGGTACTCTCTTGACCCGGAAAACCCCACAAAATCATGCAAATCAAGAGGCTCAAATCTTCGTGTTCACTTTAA
GAACACCCGTGAAACTGCGCAAGCCATCAAGGGTATGCATATCCGAAAAGCCACCAAGTACCTGAAAGATGTCACATTAA
AGAAGCAATGTGTGCCATTCCGGCGTTACAATGGTGGAGTTGGGAGGTGTGCCCAGCAGGCCAAACAGTGGGGCTGGACA
CAGGGCCGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGG
TTTAGACGTAGACTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGCGCCGTCGTACTTACAGAGCTC
ATGGTCGGATTAACCCATACATGAGTTCCCCCTGCCACATTGAGATGATCCTCACTGAAAAGGAACAAATTGTTCCTAAA
CCAGAAGAGGAGGTTGCACAGAAGAAAAAGATATCCCAGAAGAAGCTAAAGAAACAAAAACTTATGGCACGGGAATAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000022902 ortholog_one2one 5 retrogenes
retro_btau_164, retro_btau_221, retro_btau_4, retro_btau_50, retro_btau_75,
Echinops telfairi ENSETEG00000011322 possible_ortholog 10 retrogenes
retro_etel_1787, retro_etel_1810, retro_etel_1900, retro_etel_1936, retro_etel_1954, retro_etel_207, retro_etel_396, retro_etel_470, retro_etel_565, retro_etel_831,
Homo sapiens ENSG00000215472 possible_ortholog 1 retrogene
retro_hsap_2367,
Latimeria chalumnae ENSLACG00000008835 ortholog_one2one 1 retrogene
retro_lcha_38,
Macropus eugenii ENSMEUG00000016709 possible_ortholog 26 retrogenes
retro_meug_1111, retro_meug_127, retro_meug_1285, retro_meug_1485, retro_meug_1821, retro_meug_188, retro_meug_1886, retro_meug_191, retro_meug_204, retro_meug_2159, retro_meug_2167, retro_meug_2183, retro_meug_257, retro_meug_326, retro_meug_355, retro_meug_373, retro_meug_410, retro_meug_413, retro_meug_509, retro_meug_58, retro_meug_703, retro_meug_738, retro_meug_740, retro_meug_779, retro_meug_81, retro_meug_934,
Myotis lucifugus ENSMLUG00000025554 ortholog_one2many 22 retrogenes
retro_mluc_1141, retro_mluc_1224, retro_mluc_1300, retro_mluc_1375, retro_mluc_1468, retro_mluc_1500, retro_mluc_1547, retro_mluc_1579, retro_mluc_1739, retro_mluc_1755, retro_mluc_1822, retro_mluc_1870, retro_mluc_1959, retro_mluc_2018, retro_mluc_2027, retro_mluc_2036, retro_mluc_2059, retro_mluc_2165, retro_mluc_2198, retro_mluc_719, retro_mluc_835, retro_mluc_929,
Myotis lucifugus ENSMLUG00000029264 ortholog_one2many 36 retrogenes
retro_mluc_1043, retro_mluc_1060, retro_mluc_1061, retro_mluc_1081, retro_mluc_1094, retro_mluc_1163, retro_mluc_1193, retro_mluc_1206, retro_mluc_123, retro_mluc_1230, retro_mluc_1241, retro_mluc_1416, retro_mluc_157, retro_mluc_1581, retro_mluc_1652, retro_mluc_1677, retro_mluc_1693, retro_mluc_170, retro_mluc_1711, retro_mluc_1848, retro_mluc_1890, retro_mluc_2003, retro_mluc_2064, retro_mluc_2095, retro_mluc_2125, retro_mluc_2387, retro_mluc_2636, retro_mluc_2637, retro_mluc_661, retro_mluc_734, retro_mluc_763, retro_mluc_779, retro_mluc_785, retro_mluc_807, retro_mluc_938, retro_mluc_977,
Macaca mulatta ENSMMUG00000018837 possible_ortholog 26 retrogenes
retro_mmul_1015, retro_mmul_1046, retro_mmul_1205, retro_mmul_1216, retro_mmul_1225, retro_mmul_1441, retro_mmul_163, retro_mmul_172, retro_mmul_1784, retro_mmul_1858, retro_mmul_1952, retro_mmul_2006, retro_mmul_2008, retro_mmul_2257, retro_mmul_2268, retro_mmul_2284, retro_mmul_2304, retro_mmul_2512, retro_mmul_46, retro_mmul_474, retro_mmul_589, retro_mmul_652, retro_mmul_669, retro_mmul_825, retro_mmul_956, retro_mmul_971,
Monodelphis domestica ENSMODG00000003534 ortholog_one2one 11 retrogenes
retro_mdom_1153, retro_mdom_1194, retro_mdom_1437, retro_mdom_1734, retro_mdom_1783, retro_mdom_1980, retro_mdom_321, retro_mdom_337, retro_mdom_491, retro_mdom_541, retro_mdom_91,
Oryctolagus cuniculus ENSOCUG00000012485 ortholog_one2one 2 retrogenes
retro_ocun_1433, retro_ocun_231,
Pongo abelii ENSPPYG00000009151 possible_ortholog 43 retrogenes
retro_pabe_1177, retro_pabe_1178, retro_pabe_1179, retro_pabe_1197, retro_pabe_1373, retro_pabe_1408, retro_pabe_1448, retro_pabe_1464, retro_pabe_1531, retro_pabe_1565, retro_pabe_1574, retro_pabe_1725, retro_pabe_1807, retro_pabe_1832, retro_pabe_1902, retro_pabe_2052, retro_pabe_2053, retro_pabe_2088, retro_pabe_2102, retro_pabe_2164, retro_pabe_2231, retro_pabe_2317, retro_pabe_2520, retro_pabe_2635, retro_pabe_2638, retro_pabe_2871, retro_pabe_2917, retro_pabe_2921, retro_pabe_2971, retro_pabe_3020, retro_pabe_3029, retro_pabe_3103, retro_pabe_3187, retro_pabe_3248, retro_pabe_3253, retro_pabe_3262, retro_pabe_3277, retro_pabe_347, retro_pabe_3493, retro_pabe_539, retro_pabe_567, retro_pabe_617, retro_pabe_882,
Vicugna pacos ENSVPAG00000009568 possible_ortholog 1 retrogene
retro_vpac_10,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_181 73.47 51.89
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2. retro_itri_213 57.00 54.05
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3. retro_itri_300 55.67 51.89
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4. retro_itri_320 69.79 50.81
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5. retro_itri_400 52.33 89.19
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6. retro_itri_425 53.77 55.68
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7. retro_itri_513 55.29 91.35
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8. retro_itri_575 51.24 64.32
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9. retro_itri_601 61.58 100.00
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10. retro_itri_621 72.32 59.46
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11. retro_itri_625 69.68 100.00
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12. retro_itri_708 58.33 61.08
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13. retro_itri_816 71.15 55.14
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14. retro_itri_834 79.57 99.46
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15. retro_itri_949 54.17 64.32
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16. retro_itri_1006 74.78 61.08
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17. retro_itri_1015 94.78 62.16
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18. retro_itri_1066 62.79 66.49
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19. retro_itri_1070 62.96 71.89
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20. retro_itri_1148 63.85 69.19
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21. retro_itri_1212 62.10 65.95
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22. retro_itri_1238 68.28 77.30
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23. retro_itri_1312 60.53 60.54
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24. retro_itri_1351 78.99 74.05
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25. retro_itri_1360 57.78 71.35
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26. retro_itri_1385 93.75 86.49
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27. retro_itri_1424 53.61 51.35
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28. retro_itri_1451 57.79 82.70
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29. retro_itri_1476 54.55 100.00
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30. retro_itri_1479 96.74 99.46
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31. retro_itri_1625 78.43 53.51
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32. retro_itri_1648 78.08 77.84
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33. retro_itri_1712 56.36 57.30
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Download FASTA sequences of all ENSSTOG00000005193 retrocopies