RetrogeneDB ID: | retro_itri_1712 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393651.1:89172..89483(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 56.36 % |
Parental protein coverage: | 57.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | VPFRRYNGGVGRCAQQAKQWG-WTQGRWPKK-SAEFL-LHMLKNAESNAELKGLDVDSLVIEHIQVNKAP |
VPF...NG.VGRC....KQWG..TQ...PKK.SAEFL....LK..ESN.EL..LDV..LVI..IQ.NK.P | |
Retrocopy | VPFHC*NGRVGRCVE-VKQWG<LTQVHIPKK<SAEFL<ADILKYGESNTELEDLDVHFLVI*CIQMNKEP |
Parental | -KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEE |
.K....TYR.HG.I.P.M.S.CHIEM.LT.KE......EE | |
Retrocopy | <KIHCHTYRSHGKIKPHMNSLCHIEMSLTGKEFFLKLGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |