RetrogeneDB ID: | retro_itri_300 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:7952256..7952534(+) | ||
Located in intron of: | ENSSTOG00000007895 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 55.67 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPC-HIEMILTEKEQIV |
EFL...L...........L.VDSL.I.H..VNKA......T.RAHG.INPYMSSP....EMIL.EK...V | |
Retrocopy | EFLQYLL---KMQRVMLNLHVDSLIIDHTKVNKAHETHCHT*RAHGWINPYMSSPT<YTEMILPEKK*TV |
Parental | PKPEEEVAQKKKISQKKLKKQKLMARE |
PKPE..VAQKKK.S.KK.KK.KLMA.. | |
Retrocopy | PKPEKKVAQKKKTS*KKWKKSKLMAQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |