RetrogeneDB ID: | retro_itri_1238 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393409.1:3017373..3017793(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSTOG00000005193 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 77.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLK-DVTLKKQCVPFRRYNGGVGRC |
V.YSLD.EN..K.CKSRGS.L.VHFKN..ET.QAI.GMHI.KAT.YLK..V.LKK.CVPF..Y.GG.GR. | |
Retrocopy | VHYSLDLENSKKLCKSRGSSLCVHFKNISETEQAINGMHIQKATRYLK<NVILKKLCVPFWCYRGGFGRY |
Parental | AQQAKQWGWTQGRWPKKSAEFLLHML-KNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINP |
A.QAKQWG..QG.WPKKSAEFLL.ML.KNA.SNAELK.LD.DSLVI...QVNKA.K....TYRAH.RI.. | |
Retrocopy | A-QAKQWGQKQGCWPKKSAEFLLLML>KNARSNAELKDLDIDSLVI--TQVNKALKTHPHTYRAHIRIDT |
Parental | YMSSP |
....P | |
Retrocopy | HT*AP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |