RetrogeneDB ID: | retro_mmul_439 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:161134307..161134793(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4300 | ||
Ensembl ID: | ENSMMUG00000016241 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.1 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | APLRLLCSGRSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDEGLSSLAVSRP |
.PL.LLC.G.SSPATAPHPLKM.ACSKF.ST.SLVKSTS.LL..PLSAVVLK.PE..TDE.LSSLAVS.P | |
Retrocopy | SPLCLLCTGSSSPATAPHPLKMYACSKFISTISLVKSTSLLLGHPLSAVVLK*PETMTDESLSSLAVSHP |
Parental | LTSLVSSRSFQTSATSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG |
LTSLVSS.SFQTSA.SRDI..AAKFIGAGA..VGVAG.GAGIGTV.GSL.IGYARNPSLKQQLF.YAILG | |
Retrocopy | LTSLVSSHSFQTSAISRDINRAAKFIGAGATIVGVAGTGAGIGTVCGSLLIGYARNPSLKQQLFFYAILG |
Parental | FALSEAMGLFCLMVAFLILFAM |
FAL.EA.GLFCLMVAFL.LF.M | |
Retrocopy | FALWEALGLFCLMVAFLVLFPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 111 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 61 .67 RPM |
SRP007412_heart | 0 .00 RPM | 156 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 103 .64 RPM |
SRP007412_liver | 0 .00 RPM | 101 .81 RPM |
SRP007412_testis | 0 .04 RPM | 45 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_499 |
Pan troglodytes | retro_ptro_376 |
Pongo abelii | retro_pabe_236 |
Callithrix jacchus | retro_cjac_279 |