RetrogeneDB ID: | retro_pabe_1340 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:8783156..8783491(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSPPYG00000015950 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 74.34 % |
Parental protein coverage: | 73.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGP |
.V...D.S.KET.CRVTGGMKV.AD.DES.P.AA.LA.QDVAQRCKELGITALHIKL.ATGGNR.K.PGP | |
Retrocopy | YVFFLDISLKETLCRVTGGMKV*ADPDESPP*AATLATQDVAQRCKELGITALHIKLWATGGNRNKSPGP |
Parental | GAQSALRA-LARSGMKIGRIEDVTPI-PSDSTRRKGGRRGRRL |
GAQ..LRA.LA.SG.KI..IEDVTP..PSDST.RKG..RG.RL | |
Retrocopy | GAQMSLRA>LACSGVKIWQIEDVTPL>PSDSTPRKGSHRGCRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 184 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 112 .24 RPM |
SRP007412_heart | 0 .00 RPM | 182 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 315 .29 RPM |
SRP007412_liver | 0 .00 RPM | 293 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1622 |
Pan troglodytes | retro_ptro_1086 |
Gorilla gorilla | retro_ggor_1225 |