RetrogeneDB ID: | retro_ggor_2199 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:99689650..99690118(+) | ||
Located in intron of: | ENSGGOG00000023232 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSGGOG00000024593 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | WRQRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKA |
WRQRAEMAPRKGKEK.EEQVISL.PQVA.GEN.FGVCHI.ASF.DTFVHVTDLSGKE..CRVTGGMKVKA | |
Retrocopy | WRQRAEMAPRKGKEK-EEQVISL*PQVADGENIFGVCHIVASFSDTFVHVTDLSGKEILCRVTGGMKVKA |
Parental | DRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP |
D.DES.PYAA.LAAQD.AQRCKELGITALHIK.RATGGNRTKTPGPGA.SALRALA.SGMK.GRIEDV.P | |
Retrocopy | DPDESLPYAATLAAQDMAQRCKELGITALHIKHRATGGNRTKTPGPGAHSALRALAPSGMKMGRIEDVPP |
Parental | IPSDSTRRKGGRRGRRL |
I.SDST.RKGGRRGR.L | |
Retrocopy | ILSDSTHRKGGRRGRHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 190 .33 RPM |
SRP007412_cerebellum | 0 .24 RPM | 150 .38 RPM |
SRP007412_heart | 0 .09 RPM | 137 .62 RPM |
SRP007412_kidney | 0 .12 RPM | 391 .59 RPM |
SRP007412_liver | 0 .13 RPM | 366 .68 RPM |
SRP007412_testis | 0 .10 RPM | 282 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3232 |
Pan troglodytes | retro_ptro_2184 |