RetrogeneDB ID: | retro_pabe_494 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:210743011..210743463(-) | ||
Located in intron of: | ENSPPYG00000001788 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSPPYG00000015950 | ||
Aliases: | None | ||
Description: | ribosomal protein S14 [Source:HGNC Symbol;Acc:10387] |
Percent Identity: | 89.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAP.KGKEKKEEQVI.LGPQVAEGENVFGVCHIF.SFNDTFVHVTDLSGK..ICRV.GGMKVKADRDESS | |
Retrocopy | MAPGKGKEKKEEQVINLGPQVAEGENVFGVCHIFTSFNDTFVHVTDLSGKQIICRVAGGMKVKADRDESS |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST |
P.AAMLA.QDVAQRCKELG..ALHI.LRATGGNRTKT.GPGAQSALRALA.SG.KIGRIEDVTPIPSDST | |
Retrocopy | P*AAMLATQDVAQRCKELGVIALHIQLRATGGNRTKTLGPGAQSALRALACSGVKIGRIEDVTPIPSDST |
Parental | RRKG-GRRGRRL |
RRKG..RRGRRL | |
Retrocopy | RRKG<DRRGRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 2 .16 RPM | 184 .89 RPM |
SRP007412_cerebellum | 7 .17 RPM | 112 .24 RPM |
SRP007412_heart | 2 .53 RPM | 182 .79 RPM |
SRP007412_kidney | 4 .41 RPM | 315 .29 RPM |
SRP007412_liver | 1 .99 RPM | 293 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_119 |
Pan troglodytes | retro_ptro_130 |
Gorilla gorilla | retro_ggor_222 |
Macaca mulatta | retro_mmul_358 |