RetrogeneDB ID: | retro_ggor_316 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:157832998..157833395(+) | ||
Located in intron of: | ENSGGOG00000001070 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSGGOG00000024593 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.96 % |
Parental protein coverage: | 84.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | QVAEGE-NVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKEL |
QVAEGE.NVFGVCHIFA.F.DTFVHVTDLSGKETICRVTGGMKVKAD.DESSP.AA.LAAQDVAQRCKE. | |
Retrocopy | QVAEGE>NVFGVCHIFATFSDTFVHVTDLSGKETICRVTGGMKVKADQDESSPCAAFLAAQDVAQRCKEP |
Parental | GITALHIKLRATGGNRTKTPGPGA-QSALRALARSGMKIGRIEDVTPIPS-DSTRRKGGRRGRRL |
GITALH.KL.ATGGNRTKT.GPGA.QSA.RALAR..MKI..IED.TPIPS.D.T.RK.GR.G.RL | |
Retrocopy | GITALHFKLWATGGNRTKTAGPGA<QSAFRALARLSMKIRQIEDITPIPS>DGTHRKWGRCGHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 190 .33 RPM |
SRP007412_cerebellum | 0 .08 RPM | 150 .38 RPM |
SRP007412_heart | 0 .28 RPM | 137 .62 RPM |
SRP007412_kidney | 0 .16 RPM | 391 .59 RPM |
SRP007412_liver | 0 .08 RPM | 366 .68 RPM |
SRP007412_testis | 0 .00 RPM | 282 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_268 |
Pan troglodytes | retro_ptro_224 |
Pongo abelii | retro_pabe_401 |
Macaca mulatta | retro_mmul_570 |