RetrogeneDB ID: | retro_rnor_1532 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:129183839..129184268(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000000093 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSRNOG00000018774 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_073163] |
Percent Identity: | 74.15 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAP.KGKEKKEEQVISL.PQVAEGENVFGVCHIFASF.DTFVHVT.LS.K..IC.VTGGM..KA.....S | |
Retrocopy | MAPYKGKEKKEEQVISLKPQVAEGENVFGVCHIFASFSDTFVHVTILSDKASICQVTGGMRGKANCGDCS |
Parental | PYAAMLAAQDVAQRCKE-LGITALHIKLRATGGNRTKTPGPGAQSALRALARS-GMKIGRIEDVT-PIPS |
PYA.MLAAQ.VAQR.K...GITALHIK..A.G.NRTK.PG.GA.SAL.ALA....M.I..IEDVT.PIPS | |
Retrocopy | PYATMLAAQAVAQRGKD<SGITALHIKFHARGENRTKSPGLGA*SALKALACK<EMSIRWIEDVT<PIPS |
Parental | DSTRRKG |
DST.RKG | |
Retrocopy | DST*RKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .61 RPM |
SRP017611_liver | 0 .00 RPM | 28 .44 RPM |