RetrogeneDB ID: | retro_ggor_1225 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:8881364..8881663(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSGGOG00000024593 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.19 % |
Parental protein coverage: | 63.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSA |
D.S.KET.CRVTGGM.VKAD.DESSP.AAMLA.QDVAQRCKELGITALHIKL.ATGGNR.K.PGPGAQ.. | |
Retrocopy | DVSVKETLCRVTGGM*VKADPDESSP*AAMLATQDVAQRCKELGITALHIKLWATGGNRNKSPGPGAQMS |
Parental | LRA-LARSGMKIGRIEDVTP-IPSDSTRRKG |
LRA.LA.SGMKI..IEDVTP..PSDST.RKG | |
Retrocopy | LRA>LACSGMKIRQIEDVTP>FPSDSTPRKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 190 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 150 .38 RPM |
SRP007412_heart | 0 .00 RPM | 137 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 391 .59 RPM |
SRP007412_liver | 0 .00 RPM | 366 .68 RPM |
SRP007412_testis | 0 .00 RPM | 282 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1622 |
Pan troglodytes | retro_ptro_1086 |
Pongo abelii | retro_pabe_1340 |