RetrogeneDB ID: | retro_rnor_228 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:124378693..124379149(+) | ||
Located in intron of: | ENSRNOG00000008260 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031585 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSRNOG00000018774 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_073163] |
Percent Identity: | 89.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAP.KG.EKKEEQVISLGPQVAEGENV.GVCHIFASF.DTFVHVTDLSGKETICRVTGGMKVKADR.ESS | |
Retrocopy | MAPCKGTEKKEEQVISLGPQVAEGENVSGVCHIFASFSDTFVHVTDLSGKETICRVTGGMKVKADREESS |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST |
PYAAMLAAQDVA.R.KELGITALHIKL.ATGGNRTK.PGPGAQSALRALARSGMKIG.IEDVT.IPSDST | |
Retrocopy | PYAAMLAAQDVAKRSKELGITALHIKLWATGGNRTKAPGPGAQSALRALARSGMKIGQIEDVTSIPSDST |
Parental | RRKGGRRGRRL |
.RK.G..GR.L | |
Retrocopy | QRKKGCCGRCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 29 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .61 RPM |
SRP017611_liver | 0 .00 RPM | 28 .44 RPM |