RetrogeneDB ID: | retro_cpor_253 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:2077418..2077688(-) | ||
Located in intron of: | ENSCPOG00000005469 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000024408 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.05 % |
Parental protein coverage: | 60.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | CRVTGGMKVKADRDESS-PYAAMLAAQDVAQRCKELGITALHIK-LRATGGNRTKTPGPGAQSALRALAR |
C..T..MKVKAD.D.SS....AML.AQ.V.Q.CKELGITALH.K....TG.NRTKTPG......LRA.A. | |
Retrocopy | CCTTCRMKVKAD*DKSS<SMSAMLTAQVVVQGCKELGITALHTK<ILGTGRNRTKTPGL-CPISLRAFAL |
Parental | SGMKIGRIEDVTPI-PSDSTRRKGG |
.GM.I.RIE.VTPI.PSDST....G | |
Retrocopy | LGMTIVRIENVTPI<PSDSTQGRKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 90 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 127 .51 RPM |
SRP017611_liver | 0 .00 RPM | 73 .39 RPM |
SRP040447_lung | 0 .03 RPM | 237 .15 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 197 .50 RPM |