RetrogeneDB ID: | retro_rnor_1918 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:126113786..126114214(-) | ||
Located in intron of: | ENSRNOG00000012051 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046706 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSRNOG00000018774 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_073163] |
Percent Identity: | 91.72 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLA |
E.KEEQVISL.PQVAEGENV.GVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLA | |
Retrocopy | EGKEEQVISLEPQVAEGENVSGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLA |
Parental | AQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGR-IEDVTPIPSDSTRRKGGR |
AQDVAQRCKELGITALHIKLRAT.GNRTKTPGPGAQSALRALA..G...GR.IEDVT.IPSDSTRRKGGR | |
Retrocopy | AQDVAQRCKELGITALHIKLRATEGNRTKTPGPGAQSALRALA-LG*RLGR<IEDVTLIPSDSTRRKGGR |
Parental | RGRRL |
RG.RL | |
Retrocopy | RGCRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 29 .05 RPM |
SRP017611_kidney | 0 .21 RPM | 37 .61 RPM |
SRP017611_liver | 0 .00 RPM | 28 .44 RPM |