RetrogeneDB ID: | retro_rnor_1467 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:59702140..59702578(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSRNOG00000018774 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_073163] |
Percent Identity: | 88.36 % |
Parental protein coverage: | 96.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAP.KGKEKKEEQVISLGPQVAEGENVFGVCHIFASF.DTFVHV..LSGKETIC.VTGGMKVKAD.DE.S | |
Retrocopy | MAPCKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFSDTFVHVPNLSGKETIC*VTGGMKVKADQDEFS |
Parental | PYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST |
PYAAMLAAQD..QR.KELGITALHIKL.AT.GNRTKT..PGAQ.ALRALARSGMKIG..EDVTPIPSDST | |
Retrocopy | PYAAMLAAQDLVQR*KELGITALHIKLWATEGNRTKTSAPGAQTALRALARSGMKIGWSEDVTPIPSDST |
Parental | RRKGGR |
RRKGGR | |
Retrocopy | RRKGGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .61 RPM |
SRP017611_liver | 0 .00 RPM | 28 .44 RPM |